Apologies… I accidentally posted this message previously without a subject
hi… I’m a new avogadro user.
Can someone tell me if I can use avogadro to observe the hydrogen
bonding in water? I tried placing a few molecules of H2O and enabling
the hydrogen bond display but only a few hydrogen bonds were formed and
I don’t if it that’s accurate.
(choosing options optimize geometry arranges the molecules so that H
bonds are formed but the auto-optimization tool seems to break all those
bonds and arrange the molecules some distance away from each other.)
Is there a way I can visualize the H bond formation in ice?