I am trying to model the SF6 molecule with Avogadro. When optimizing it I am getting a weird structure instead of the sp3d2 hybridized orbital structure that has an octahedral shape. Instead, after optimizing the shape, I get a flat structure.
I was using MMFF94 without knowing it (it was autodetected) but when I used UFF it worked fine and the right structure was rendered. Thanks, I need to read more about the settings for the force field. The version of Avogadro that I am using is: 1.99.0