Dear contributors and users,
The well known visualizer JMOL allow to setup bond length in compound by tuning “Bond tolerance” and “Minimal bonding distance”, to visualize the bonds between atoms. This is very usefull feature, which I can’t find in Avogadro. Sometime I need to import the structure from “.xyz” ASCII file format and Avogadro fails to construct all bonds properly. I think this is due to fixed bond length for selected atoms. Is there any way to recalculate bonds with other tolerance or is it possible to construct manually bonds between atoms.
Many thanks in advance.