Bugs item #2213937, was opened at 2008-11-01 12:49
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Category: None
Group: v 0.8.0
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Nobody/Anonymous (nobody)
Assigned to: Nobody/Anonymous (nobody)
Summary: PDB created by Avogadro displayed incorrectly in other apps
Initial Comment:
If I use the “save as” command to create a PDB file in Avogadro, it won’t display correctly in some other applications, especially QuteMol, an app which is used for rendering molecule image.
The PDB files created by Avogadro display incorrectly in QuteMol, it looks like that there were no difference between every atoms, and I can’t see which is H or which is C.
However, if I open that PDB in PyMOL and saved it again in PDB with PyMOL, then everything is OK. So maybe the PDB export function was broken in Avogadro. Can it be fixed in future version?
Thanks!
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=835077&aid=2213937&group_id=165310