Opening any PDB files crashes avogrado on mac os 10.4.11

Bugs item #1916830, was opened at 2008-03-17 16:05
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Category: Commands / Extensions
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Jan Jensen (jhjensen2)
Assigned to: Nobody/Anonymous (nobody)
Summary: opening any PDB files crashes avogrado on mac os 10.4.11

Initial Comment:
Date/Time: 2008-03-17 16:04:33.118 +0100
OS Version: 10.4.11 (Build 8S2167)
Report Version: 4

Command: avogadro
Path: /Applications/avogadro.app/Contents/MacOS/avogadro
Parent: WindowServer [56]

Version: (0.6.1)

PID: 322
Thread: 0

Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_INVALID_ADDRESS (0x0001) at 0x6e55007e

Thread 0 Crashed:
0 libopenbabel.2.dylib 0x0024bd54 std::_Rb_tree<char const*, std::pair<char const* const, OpenBabel::OBPlugin*>, std::_Select1st<std::pair<char const* const, OpenBabel::OBPlugin*> >, OpenBabel::CharPtrLess, std::allocator<std::pair<char const* const, OpenBabel::OBPlugin*> > >::lower_bound(char const* const&) + 52
1 libopenbabel.2.dylib 0x0024c06a std::map<char const*, OpenBabel::OBPlugin*, OpenBabel::CharPtrLess, std::allocator<std::pair<char const* const, OpenBabel::OBPlugin*> > >::operator[](char const* const&) + 26
2 libopenbabel.2.dylib 0x0024ba59 OpenBabel::OBFormat::RegisterFormat(char const*, char const*) + 41
3 chemdrawformat.so 0x1219566f _static_initialization_and_destruction_0(int, int) + 139 (chemdrawformat.cpp:30)
4 dyld 0x8fe0fe90 ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) + 170
5 dyld 0x8fe0a236 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&) + 160
6 dyld 0x8fe0ccad ImageLoader::link(ImageLoader::LinkContext const&, ImageLoader::BindingLaziness, ImageLoader::InitializerRunning, unsigned) + 403
7 dyld 0x8fe03982 dyld::link(ImageLoader*, ImageLoader::BindingLaziness, ImageLoader::InitializerRunning) + 160
8 dyld 0x8fe0927d dlopen + 319
9 libSystem.B.dylib 0x90028a9a dlopen + 78
10 libopenbabel.2.dylib 0x002c59cb DLHandler::openLib(std::basic_string<char, std::char_traits, std::allocator > const&) + 27
11 libopenbabel.2.dylib 0x00274959 OpenBabel::OBConversion::LoadFormatFiles() + 313
12 libopenbabel.2.dylib 0x0027b812 OpenBabel::OBConversion::OBConversion[not-in-charge](std::basic_istream<char, std::char_traints >, std::basic_ostream<char, std::char_traits >) + 418
13 net.sourceforge 0x00017993 Avogadro::MainWindow::loadFile(QString const&) + 451
14 net.sourceforge 0x0001979b Avogadro::MainWindow::openFile(QString) + 987
15 net.sourceforge 0x0001c8e4 Avogadro::MainWindow::qt_metacall(QMetaObject::Call, int, void**) + 1796
16 QtCore 0x01a5e3af QMetaObject::activate(QObject*, int, int, void**) + 941
17 QtGui 0x01010a01 QAction::triggered(bool) + 75
18 QtGui 0x010111f4 QAction::activate(QAction::ActionEvent) + 150
19 QtGui 0x013a9dda qt_mac_activate_action(OpaqueMenuRef*, unsigned, QAction::ActionEvent, bool) + 152
20 QtGui 0x013aa33e qt_mac_menu_event(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 514
21 com.apple.HIToolbox 0x92deb4d7 DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1093
22 com.apple.HIToolbox 0x92deab7c SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 304
23 com.apple.HIToolbox 0x92df1f7c SendEventToEventTarget + 56
24 com.apple.HIToolbox 0x92e72add SendHICommandEvent(unsigned long, HICommand const*, unsigned long, unsigned long, unsigned char, OpaqueEventTargetRef*, OpaqueEventTargetRef*, OpaqueEventRef**) + 405
25 com.apple.HIToolbox 0x92ea68c6 ProcessHICommandWithContextAndModifiers + 60
26 com.apple.HIToolbox 0x92ea6864 SendMenuItemSelectedEvent + 128
27 com.apple.HIToolbox 0x92ec58b6 CompatibilityMenuBarEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 410
28 com.apple.HIToolbox 0x92deb4d7 DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1093
29 com.apple.HIToolbox 0x92deab7c SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 304
30 com.apple.HIToolbox 0x92deaa41 SendEventToEventTargetWithOptions + 55
31 com.apple.HIToolbox 0x92df25c0 ToolboxEventDispatcherHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 1602
32 com.apple.HIToolbox 0x92deb88e DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 2044
33 com.apple.HIToolbox 0x92deab7c SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 304
34 com.apple.HIToolbox 0x92df1f7c SendEventToEventTarget + 56
35 QtGui 0x0105c026 qt_mac_send_event(QFlagsQEventLoop::ProcessEventsFlag, OpaqueEventRef*, OpaqueWindowPtr*) + 86
36 QtGui 0x010694b0 QEventDispatcherMac::processEvents(QFlagsQEventLoop::ProcessEventsFlag) + 624
37 QtCore 0x01a4e6f0 QEventLoop::processEvents(QFlagsQEventLoop::ProcessEventsFlag) + 54
38 QtCore 0x01a4e80f QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 109
39 QtCore 0x01a507b5 QCoreApplication::exec() + 147
40 net.sourceforge 0x00010cc5 main + 4149
41 net.sourceforge 0x00006982 _start + 216
42 net.sourceforge 0x000068a9 start + 41

Thread 1:
0 libSystem.B.dylib 0x900248c7 semaphore_wait_signal_trap + 7
1 QtCore 0x019a31e4 QWaitCondition::wait(QMutex*, unsigned long) + 310
2 libavogadro.0.dylib 0x00098fea Avogadro::GLThread::run() + 154
3 QtCore 0x019a22c6 QThreadPrivate::start(void*) + 190
4 libSystem.B.dylib 0x90024227 _pthread_body + 84

Thread 2:
0 libSystem.B.dylib 0x90026d5c kevent + 12
1 …ple.CoreServices.CarbonCore 0x90cb8c68 PrivateMPEntryPoint + 51
2 libSystem.B.dylib 0x90024227 _pthread_body + 84

Thread 3:
0 libSystem.B.dylib 0x900248c7 semaphore_wait_signal_trap + 7
1 …ple.CoreServices.CarbonCore 0x90cb8e0d MPWaitOnQueue + 198
2 com.apple.DesktopServices 0x92724943 TNodeSyncTask::SyncTaskProc(void*) + 143
3 …ple.CoreServices.CarbonCore 0x90cb8c68 PrivateMPEntryPoint + 51
4 libSystem.B.dylib 0x90024227 _pthread_body + 84

Thread 4:
0 libSystem.B.dylib 0x90047dd7 semaphore_timedwait_signal_trap + 7
1 …ple.CoreServices.CarbonCore 0x90cb8e0d MPWaitOnQueue + 198
2 com.apple.DesktopServices 0x927469d7 TPropertyTask::PropertyTaskProc(void*) + 101
3 …ple.CoreServices.CarbonCore 0x90cb8c68 PrivateMPEntryPoint + 51
4 libSystem.B.dylib 0x90024227 _pthread_body + 84

Thread 5:
0 libSystem.B.dylib 0x90047dd7 semaphore_timedwait_signal_trap + 7
1 …ple.CoreServices.CarbonCore 0x90cb8e0d MPWaitOnQueue + 198
2 com.apple.DesktopServices 0x927482ad TIconRefTask::IconRefTaskProc(void*) + 87
3 …ple.CoreServices.CarbonCore 0x90cb8c68 PrivateMPEntryPoint + 51
4 libSystem.B.dylib 0x90024227 _pthread_body + 84

Thread 6:
0 libSystem.B.dylib 0x90047dd7 semaphore_timedwait_signal_trap + 7
1 …ple.CoreServices.CarbonCore 0x90cb8e0d MPWaitOnQueue + 198
2 com.apple.DesktopServices 0x927469d7 TPropertyTask::PropertyTaskProc(void*) + 101
3 …ple.CoreServices.CarbonCore 0x90cb8c68 PrivateMPEntryPoint + 51
4 libSystem.B.dylib 0x90024227 _pthread_body + 84

Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x12195c84 ebx: 0x0024ba41 ecx: 0x00116990 edx: 0xbfffe084
edi: 0x0032e1b8 esi: 0x6e55006e ebp: 0xbfffe008 esp: 0xbfffdff0
ss: 0x0000001f efl: 0x00010202 eip: 0x0024bd54 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

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0x92b4d000 - 0x92ba5fff libGLU.dylib /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x92bb9000 - 0x92bb9fff com.apple.Carbon 10.4 (???) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x92bbb000 - 0x92bcbfff com.apple.ImageCapture 3.0.4 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x92bd9000 - 0x92be1fff com.apple.speech.recognition.framework 3.6 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x92be7000 - 0x92becfff com.apple.securityhi 2.0.1 (24742) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x92bf2000 - 0x92c83fff com.apple.ink.framework 101.2.1 (71) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x92c97000 - 0x92c9afff com.apple.help 1.0.3 (32.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x92c9d000 - 0x92cbafff com.apple.openscripting 1.2.5 (???) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x92cca000 - 0x92cd0fff com.apple.print.framework.Print 5.2 (192.4) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x92cd6000 - 0x92d39fff com.apple.htmlrendering 66.1 (1.1.3) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering
0x92d5d000 - 0x92d9efff com.apple.NavigationServices 3.4.4 (3.4.3) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0x92dc5000 - 0x92dd2fff com.apple.audio.SoundManager 3.9.1 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x92dd9000 - 0x92ddefff com.apple.CommonPanels 1.2.3 (73) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x92de3000 - 0x930d8fff com.apple.HIToolbox 1.4.10 (???) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x931de000 - 0x931e9fff com.apple.opengl 1.4.16 /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x9327b000 - 0x93931fff com.apple.AppKit 6.4.9 (824.44) /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x93cb2000 - 0x93d2dfff com.apple.CoreData 91 (92.1) /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x93d66000 - 0x93e1ffff com.apple.audio.toolbox.AudioToolbox 1.4.7 /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x93e62000 - 0x93e62fff com.apple.audio.units.AudioUnit 1.4.2 /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x93e64000 - 0x94025fff com.apple.QuartzCore 1.4.12 /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x9406b000 - 0x940acfff libsqlite3.0.dylib /usr/lib/libsqlite3.0.dylib
0x940b4000 - 0x940eefff libGLImage.dylib /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x940f3000 - 0x94109fff com.apple.CoreVideo 1.4.2 /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x9429a000 - 0x942a9fff libCGATS.A.dylib /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
0x942b0000 - 0x942bbfff libCSync.A.dylib /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
0x94307000 - 0x94321fff libRIP.A.dylib /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
0x94327000 - 0x9463efff com.apple.QuickTime 7.4.1 (14) /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime
0x9635d000 - 0x96373fff libJapaneseConverter.dylib /System/Library/CoreServices/Encodings/libJapaneseConverter.dylib
0x96375000 - 0x96396fff libKoreanConverter.dylib /System/Library/CoreServices/Encodings/libKoreanConverter.dylib
0x963a3000 - 0x963b1fff libSimplifiedChineseConverter.dylib /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x963b9000 - 0x963cbfff libTraditionalChineseConverter.dylib /System/Library/CoreServices/Encodings/libTraditionalChineseConverter.dylib
0x972ee000 - 0x973c5fff libGLProgrammability.dylib /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x973e0000 - 0x973e1fff libGLSystem.dylib /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLSystem.dylib
0x973e3000 - 0x973e8fff com.apple.agl 2.5.9 (AGL-2.5.9) /System/Library/Frameworks/AGL.framework/Versions/A/AGL

Model: MacBookPro1,1, BootROM MBP11.0055.B08, 2 processors, Intel Core Duo, 2 GHz, 1 GB
Graphics: ATI Radeon X1600, ATY,RadeonX1600, PCIe, 128 MB
Memory Module: BANK 0/DIMM0, 512 MB, DDR2 SDRAM, 667 MHz
Memory Module: BANK 1/DIMM1, 512 MB, DDR2 SDRAM, 667 MHz
AirPort: spairport_wireless_card_type_airport_extreme (0x168C, 0x86), 1.1.9.3
Bluetooth: Version 1.9.5f4, 2 service, 1 devices, 1 incoming serial ports
Network Service: Built-in Ethernet, Ethernet, en0
Serial ATA Device: FUJITSU MHV2100BH, 93.16 GB
Parallel ATA Device: HL-DT-ST DVDRW GWA4080M
USB Device: Built-in iSight, Micron, Up to 480 Mb/sec, 500 mA
USB Device: IR Receiver, Apple Computer, Inc., Up to 12 Mb/sec, 500 mA
USB Device: Bluetooth USB Host Controller, Apple, Inc., Up to 12 Mb/sec, 500 mA
USB Device: Apple Internal Keyboard / Trackpad, Apple Computer, Up to 12 Mb/sec, 500 mA


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