Bugs item #2824269, was opened at 2009-07-20 15:43
Message generated for change (Tracker Item Submitted) made by jhjensen2
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Category: Commands / Extensions
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Jan Jensen (jhjensen2)
Assigned to: Nobody/Anonymous (nobody)
Summary: inser smiles gives wrong stereo isomer
Initial Comment:
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I generates this SMILES string for cis decalin: C1[C@H]2C@@HCCCC2 using http://pubchem.ncbi.nlm.nih.gov/edit/index.html
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When pasting it into Avogadro via “Build > Insert > SMILES”, I get the trans-isomer
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Pasting C1[C@H]2C@@HCCCC2 into Chemdraw gives the cis isomer, so SMILES is correct
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Other observation: [H][C@@]12C@@([H])CCCC1 (found at http://www-jmg.ch.cam.ac.uk/data/molecules/misc/cisdecalin.html) gives the right isomer in BOTH Avogadro and ChemDraw
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