Good morning, I’ve been using Avogadro recently. I would like to know how I can do to optimize the shape of the molecule after creating atoms and bonds.
Please see the following link http://www.ilcrocicchio.it/notizie/ambiente/229-prova1.html for H2SO4.
There are two general ways:
- The auto-optimize tool (interactive)
https://avogadro.cc/docs/tools/auto-optimize-tool/
- Optimize Geometry on the “Extensions” menu
https://avogadro.cc/docs/menus/extensions-menu/