Generated surfaces not lining up with structure

Bugs item #2982170, was opened at 2010-04-05 17:12
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Category: Rendering
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Nobody/Anonymous (nobody)
Assigned to: Nobody/Anonymous (nobody)
Summary: Generated surfaces not lining up with structure

Initial Comment:
First off, let me say that I absolutely love this program. I came across a weird problem, where a generated surface (in the example, an VdW surface) isn’t lining up with the molecular geometry (see attached screenshot). The structure was generated from a Gaussian 03 fchk file. The same problem happens with other surfaces (MOs). I’ve loaded several other fchk files and generated surfaces without any other trouble. The only thing I can think of is that this particular molecule is of higher symmetry than all the others I’ve looked at. I’m using Avogadro 1.0.0 on Mac OS X 10.6.3 (same problem happened with 10.6.2).

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