Bugs item #2002068, was opened at 2008-06-24 21:41
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: e//tropia (ntropia314)
Assigned to: Nobody/Anonymous (nobody)
Summary: Crash while adding hydrogen w/o any selection
Initial Comment:
If I try to add hydrogens without selecting any molecule or atom, the program crashes with this error message.
If a molecule is selected everything goes well.
Here is the operations:
-Draw an ethane molecule
-Build->Remove Hydrogen
-Build->Add Hydrogen
-Crash
---------8<-----------------------
System has OpenGL support.
Locale: "C"
Loaded translations (if needed) about to test OpenGL capabilities.
OpenGL capabilities found:
Double Buffering.
Direct Rendering.
Antialiasing.
Found Tool: “Align” - "Align molecules"
Found Tool: “AutoOptimization” - "Automatic Optimization Tool"
Found Tool: “AutoRotate” - "Auto Rotation Tool"
Found Tool: “Bond Centric Manipulate” - "Bond Centric Manipulation Tool"
Found Tool: “Measure” - "Click to Measure Tool"
Found Tool: “Draw” - "Draws Things"
Found Tool: “Manipulate” - "Manipulation Tool"
Found Tool: “Navigate” - "Navigation Tool"
Found Tool: “Select/Rotate” - "Selection and Rotation Tool"
Found Extension: “Animation” - "Animation Plugin"
Found Extension: “ForceField” - "ForceField Plugin"
Found Extension: “GAMESS” - "GAMESS Input Deck Generator"
Found Extension: “Gaussian Input Deck” - "Gaussian input deck generator"
Found Extension: “H2Methyl” - "H2Methyl Plugin"
Found Extension: “Hydrogens” - "Hydrogens Plugin"
Found Extension: “Orbitals” - "Orbital cube generator"
Found Extension: “Properties” - "Properties Plugin"
Found Extension: “Selections” - "Selection Plugin"
Found Extension: “UnitCell” - "Unit Cell Parameters Plugin"
SetMolecule Called!
GLWidget initialisation…
GLWidget initialised…
createObjects()
Loading File
SetMolecule Called!
avogadro: symbol lookup error: /usr/lib/avogadro/extensions/libhydrogensextension.so: undefined symbol: _ZN9OpenBabel5OBMol12AddHydrogensEbb
---------8<-----------------------
System Details
I’m using the v0.8.0 downloaded from Debian experimental. The system is a Debian Sid running on a 2.6.25-2-amd64 kernel. The installed packages are following:
libopenbabel3 2.2.0~beta6~r2551-1
openbabel 2.1.1 (compiled from svn)
avogadro 0.8.0-1
libavogadro0 0.8.0-1
Stefano
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=835077&aid=2002068&group_id=165310