Bugs item #1788674, was opened at 2007-09-05 19:37
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: soc (soc88)
Assigned to: Nobody/Anonymous (nobody)
Summary: Crash: glibc detected avogadro: double free or corruption
Initial Comment:
- while performing geometry optimizations:
==========================================================
(“avogadro”)
Found Engine: “Axes” - "Renders x, y and z axes"
Found Engine: “Dynamic Ball and Stick” - "Renders primitives using Balls (atoms) and Sticks (bonds). Includes demonstration of dynamic rendering based on distance from camera"
Found Engine: “Debug Info” - "Renders debug information"
Found Engine: “Label” - "Renders primitive labels"
Found Engine: “Ribbon” - "Renders residues as ribbons"
Found Engine: “VdW Sphere” - "Renders atoms as Van der Waals spheres"
Found Engine: “Stick” - "Renders as Cylinders"
Found Engine: “Wireframe” - “Wireframe rendering”
"libautorotatetool.so"
Found Tool: “AutoRotate” - “Auto Rotation Tool”
"libbondcentrictool.so"
Found Tool: “BondCentric” - “Bond Centric Manipulation Tool”
"libclickmeasuretool.so"
Found Tool: “ClickMeasure” - “Click to Measure Tool”
"libdrawtool.so"
Found Tool: “Draw” - “Draws Things”
"libmanipulatetool.so"
Found Tool: “Manipulate” - “Manipulation Tool”
"libnavigatetool.so"
Found Tool: “Navigate” - “Navigation Tool”
"libselectrotatetool.so"
Found Tool: “Select/Rotate” - "Selection and Rotation Tool"
SearchPath: “/usr/local/lib/avogadro/extensions”
Found Extension: “GAMESS” - "GAMESS Input Deck Generator"
Object::connect: Parentheses expected, slot Avogadro::GamessExtension::dockWidgetDestroyed
ForceFieldDialog::ForceFieldDialog()
Found Extension: “Ghemical” - "Ghemical Plugin"
Found Extension: “H2Methyl” - "H2Methyl Plugin"
Found Extension: “Hydrogens” - "Hydrogens Plugin"
Found Extension: “SMARTS” - "SMARTS Plugin"
Found Extension: “UnitCell” - "Unit Cell Parameters Plugin"
createObjects()
QObject::connect: Cannot queue arguments of type ‘QTextCursor’
(Make sure ‘QTextCursor’ is registered using qRegisterMetaType().)
*** glibc detected *** avogadro: double free or corruption (!prev): 0x0000000001a4a250 ***
======= Backtrace: =========
/lib/libc.so.6[0x2b302c033b0a]
/lib/libc.so.6[0x2b302c0356d8]
/lib/libc.so.6(realloc+0x129)[0x2b302c037979]
/usr/lib/libQtGui.so.4[0x2b30285e191a]
/usr/lib/libQtGui.so.4[0x2b30285e5410]
/usr/lib/libQtGui.so.4[0x2b30285e570b]
/usr/lib/libQtGui.so.4[0x2b3028601d15]
/usr/lib/libQtGui.so.4[0x2b3028550829]
/usr/lib/libQtGui.so.4(_ZNK11QTextEngine9shapeTextEi+0x272)[0x2b302856156e]
/usr/lib/libQtGui.so.4(_ZNK11QTextEngine5shapeEi+0x116)[0x2b3028562a16]
/usr/lib/libQtGui.so.4(_ZN9QTextLine13layout_helperEi+0x2da)[0x2b302856d306]
/usr/lib/libQtGui.so.4(_ZN9QTextLine12setLineWidthEd+0x75)[0x2b302856e0d1]
/usr/lib/libQtGui.so.4[0x2b30285a1b4c]
/usr/lib/libQtGui.so.4[0x2b30285a3ea0]
/usr/lib/libQtGui.so.4[0x2b30285a8314]
/usr/lib/libQtGui.so.4[0x2b30285a8a23]
/usr/lib/libQtGui.so.4[0x2b30285a8af7]
/usr/lib/libQtGui.so.4[0x2b30285a95f4]
/usr/lib/libQtGui.so.4[0x2b302858b7be]
/usr/lib/libQtGui.so.4(_ZN11QTextCursor12endEditBlockEv+0x4f)[0x2b30285b2bcf]
/usr/lib/libQtGui.so.4(_ZN12QTextControl6appendERK7QString+0x139)[0x2b3028551e4f]
/usr/lib/libQtGui.so.4(_ZN9QTextEdit6appendERK7QString+0x58)[0x2b302876a05c]
/usr/local/lib/avogadro/extensions/libghemicalextension.so(_ZN8Avogadro14GhemicalThread3runEv+0x4da)[0x2aaaad0d62c2]
/usr/lib/libQtCore.so.4[0x2b302a7a1a12]
/lib/libpthread.so.0[0x2b302ad44317]
/lib/libc.so.6(clone+0x6d)[0x2b302c095ccd]
======= Memory map: ========
00400000-0045e000 r-xp 00000000 08:03 544236 /usr/local/bin/avogadro
0065d000-0065f000 rw-p 0005d000 08:03 544236 /usr/local/bin/avogadro
0065f000-01f5b000 rw-p 0065f000 00:00 0 [heap]
40000000-40001000 —p 40000000 00:00 0
40001000-40801000 rwxp 40001000 00:00 0
40801000-40802000 —p 40801000 00:00 0
40802000-41002000 rwxp 40802000 00:00 0
41002000-41003000 —p 41002000 00:00 0
41003000-41803000 rwxp 41003000 00:00 0
41803000-41804000 —p 41803000 00:00 0
41804000-42004000 rwxp 41804000 00:00 0
2aaaaaaab000-2aaaaaab3000 r-xp 00000000 08:03 35668 /usr/lib/qt4/plugins/imageformats/libqgif.so
2aaaaaab3000-2aaaaacb2000 —p 00008000 08:03 35668 /usr/lib/qt4/plugins/imageformats/libqgif.so
2aaaaacb2000-2aaaaacb3000 rw-p 00007000 08:03 35668 /usr/lib/qt4/plugins/imageformats/libqgif.so
2aaaaacb3000-2aaaaacbf000 r-xp 00000000 08:03 35682 /usr/lib/qt4/plugins/imageformats/libqjpeg.so
2aaaaacbf000-2aaaaaebe000 —p 0000c000 08:03 35682 /usr/lib/qt4/plugins/imageformats/libqjpeg.so
2aaaaaebe000-2aaaaaebf000 rw-p 0000b000 08:03 35682 /usr/lib/qt4/plugins/imageformats/libqjpeg.so
2aaaaaedc000-2aaaaaefd000 r-xp 00000000 08:03 7205 /usr/lib/libjpeg.so.62.0.0
2aaaaaefd000-2aaaaaffd000 —p 00021000 08:03 7205 /usr/lib/libjpeg.so.62.0.0
2aaaaaffd000-2aaaaaffe000 rw-p 00021000 08:03 7205 /usr/lib/libjpeg.so.62.0.0
2aaaaaffe000-2aaaab005000 r-xp 00000000 08:03 38729 /usr/lib/qt4/plugins/imageformats/libqmng.so
2aaaab005000-2aaaab204000 —p 00007000 08:03 38729 /usr/lib/qt4/plugins/imageformats/libqmng.so
2aaaab204000-2aaaab205000 rw-p 00006000 08:03 38729 /usr/lib/qt4/plugins/imageformats/libqmng.so
2aaaab222000-2aaaab29c000 r-xp 00000000 08:03 7250 /usr/lib/libmng.so.1.1.0.9
2aaaab29c000-2aaaab39b000 —p 0007a000 08:03 7250 /usr/lib/libmng.so.1.1.0.9
2aaaab39b000-2aaaab3a0000 rw-p 00079000 08:03 7250 /usr/lib/libmng.so.1.1.0.9
2aaaab3a0000-2aaaab3d2000 r-xp 00000000 08:03 82533 /usr/lib/liblcms.so.1.0.16
2aaaab3d2000-2aaaab5d2000 —p 00032000 08:03 82533 /usr/lib/liblcms.so.1.0.16
2aaaab5d2000-2aaaab5d4000 rw-p 00032000 08:03 82533 /usr/lib/liblcms.so.1.0.16
2aaaab5d4000-2aaaab5d6000 rw-p 2aaaab5d4000 00:00 0
2aaaab5d6000-2aaaab5db000 r-xp 00000000Aborted
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