Hi guys,
I’m trying to compile/install Gamess, but a big message of Error is showing.
After the sequence of command:
cmake -Wno-dev …/
make -j2
putfileextension.dir/moc_lammpsinputdialog.cxx.o
[ 71%] Linking CXX shared module …/…/…/…/lib/inputfileextension.so
[ 71%] Built target inputfileextension
Makefile:149: recipe for target ‘all’ failed
make: *** [all] Error 2
Tips?
I include a file output in
I think you mean that you’re compiling Avogadro, not GAMESS. 
Since you’re using make -j2 any error isn’t clear from the small paste you included.
Can you run make (no -j2) and paste the whole log, e.g., to pastebin?
I’m sorry, I wrote about the error thinking of another program.
Well, I rode both with -j2 and without, and the error is the same.
[ 63%] Linking CXX executable …/…/…/…/…/bin/qube
[ 63%] Built target qube
[ 63%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o
[ 63%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o
[ 63%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o
[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o
[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o
[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o
[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o
[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o
[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o
[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o
[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o
[ 64%] Linking CXX static library libtubegen.a
[ 64%] Built target tubegen
[ 64%] Generating ui_swcntbuilderwidget.h
[ 64%] Generating moc_swcntbuilderextension.cxx
[ 64%] Generating moc_swcntbuilderwidget.cxx
[ 64%] Generating moc_avotubegen.cxx
Scanning dependencies of target swcntbuilderextension
[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o
[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o
[ 65%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o
[ 65%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o
[ 65%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o
[ 65%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o
[ 65%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o
[ 65%] Linking CXX shared module …/…/…/…/lib/swcntbuilderextension.so
[ 65%] Built target swcntbuilderextension
[ 65%] Generating moc_qtaimextension.cxx
Scanning dependencies of target qtaimextension
[ 65%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o
[ 65%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o
[ 65%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o
libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make:115: recipe for target ‘libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o’ failed
CMakeFiles/Makefile2:2773: recipe for target ‘libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all’ failed
Makefile:149: recipe for target ‘all’ failed
I have not had an answer so far.
You keep posting error reports from parallel builds. The error seems to be with inputfileextension but nothing in the text or image reflects those files.
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:2340:78: error: no matching function for call to ‘Avogadro::QTAIMWavefunctionEvaluator::ipow(Eigen::internal::enable_if<true, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >::type, int)’
value(2,2)+=(m_occno(m)(2m_cdg000(m)m_cdg002(m)-2ipow(m_cdg001(m),2) ));
^
In file included from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:27:0:
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:105:25: note: candidate: static qreal Avogadro::QTAIMWavefunctionEvaluator::ipow(qreal, qint64)
static inline qreal ipow(qreal a, qint64 n)
^
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:105:25: note: no known conversion for argument 1 from ‘Eigen::internal::enable_if<true, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >::type {aka Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>}’ to ‘qreal {aka double}’
In file included from /usr/local/include/eigen3/Eigen/Core:361:0,
from /home/verena/avogadro/avogadro/build/libavogadro/include/avogadro/primitive.h:36,
from /home/verena/avogadro/avogadro/build/libavogadro/include/avogadro/molecule.h:29,
from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40,
from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:13,
from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:27:
/usr/local/include/eigen3/Eigen/src/Core/util/Meta.h: In instantiation of ‘Eigen::Index Eigen::internal::size(const T&) [with T = long long int; Eigen::Index = long int]’:
/usr/local/include/eigen3/Eigen/src/Core/IndexedView.h:124:45: required from ‘Eigen::Index Eigen::IndexedView<XprType, RowIndices, ColIndices>::rows() const [with XprType = Eigen::Matrix<double, -1, 1>; RowIndices = long long int; ColIndices = Eigen::internal::SingleRange; Eigen::Index = long int]’
/usr/local/include/eigen3/Eigen/src/Core/…/plugins/CommonCwiseBinaryOps.h:50:1: required from ‘typename Eigen::internal::enable_if<true, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type, typename Eigen::internal::traits::Scalar>, const typename Eigen::internal::plain_constant_type<Derived, typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type>::type, const Derived> >::type Eigen::operator*(const T&, const StorageBaseType&) [with T = int; Derived = Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>; typename Eigen::internal::enable_if<true, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type, typename Eigen::internal::traits::Scalar>, const typename Eigen::internal::plain_constant_type<Derived, typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type>::type, const Derived> >::type = const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op, const Eigen::Matrix<double, -1, 1> >, const Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >; Eigen::MatrixBase::StorageBaseType = Eigen::MatrixBase<Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >]’
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:246:32: required from here
/usr/local/include/eigen3/Eigen/src/Core/util/Meta.h:334:40: error: request for member ‘size’ in ‘x’, which is of non-class type ‘const long long int’
Index size(const T& x) { return x.size(); }
^
libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make:115: recipe for target ‘libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o’ failed
make[2]: *** [libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o] Error 1
CMakeFiles/Makefile2:2773: recipe for target ‘libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all’ failed
make[1]: *** [libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all] Error 2
Makefile:149: recipe for target ‘all’ failed
make: *** [all] Error 2
I removed all the libraries that are needed, and installed again, this is the “new” bug.
I just use ‘make’ not ‘make -j2’
You’re using too new a version of Eigen. Please use Eigen2 or Eigen 3.2 or older.
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:105:25: note: no known conversion for argument 1 from ‘Eigen::internal::enable_if<true, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >::type {aka Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>}’ to ‘qreal {aka double}’
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:2339:17: error: no match for ‘operator+=’ (operand types are ‘Eigen::DenseCoeffsBase<Eigen::Matrix<double, 3, 3>, 1>::Scalar {aka double}’ and ‘const Eigen::Product<Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op, const Eigen::Matrix<double, -1, 1> >, const Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>, 0>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op, const Eigen::Matrix<double, -1, 1> >, const Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>, 0> >, 0>’)
value(1,2)+=(m_occno(m)(2m_cdg000(m)m_cdg011(m)-2m_cdg010(m)m_cdg001
^
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:2340:78: error: no matching function for call to ‘Avogadro::QTAIMWavefunctionEvaluator::ipow(Eigen::internal::enable_if<true, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >::type, int)’
value(2,2)+=(m_occno(m)(2m_cdg000(m)m_cdg002(m)-2ipow(m_cdg001(m),2) ));
^
In file included from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:27:0:
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:105:25: note: candidate: static qreal Avogadro::QTAIMWavefunctionEvaluator::ipow(qreal, qint64)
static inline qreal ipow(qreal a, qint64 n)
^
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:105:25: note: no known conversion for argument 1 from ‘Eigen::internal::enable_if<true, Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >::type {aka Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>}’ to ‘qreal {aka double}’
In file included from /usr/local/include/eigen3/Eigen/Core:361:0,
from /home/verena/avogadro/avogadro/build/libavogadro/include/avogadro/primitive.h:36,
from /home/verena/avogadro/avogadro/build/libavogadro/include/avogadro/molecule.h:29,
from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40,
from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:13,
from /home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:27:
/usr/local/include/eigen3/Eigen/src/Core/util/Meta.h: In instantiation of ‘Eigen::Index Eigen::internal::size(const T&) [with T = long long int; Eigen::Index = long int]’:
/usr/local/include/eigen3/Eigen/src/Core/IndexedView.h:124:45: required from ‘Eigen::Index Eigen::IndexedView<XprType, RowIndices, ColIndices>::rows() const [with XprType = Eigen::Matrix<double, -1, 1>; RowIndices = long long int; ColIndices = Eigen::internal::SingleRange; Eigen::Index = long int]’
/usr/local/include/eigen3/Eigen/src/Core/…/plugins/CommonCwiseBinaryOps.h:50:1: required from ‘const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type, typename Eigen::internal::traits::Scalar>, const typename Eigen::internal::plain_constant_type<Derived, typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type>::type, const Derived> Eigen::operator(const T&, const StorageBaseType&) [with T = int; Derived = Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange>; typename Eigen::internal::plain_constant_type<Derived, typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type>::type = Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::promote_scalar_arg<typename Eigen::internal::traits::Scalar, T, Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<T, typename Eigen::internal::traits::Scalar, Eigen::internal::scalar_product_op<T, typename Eigen::internal::traits::Scalar> > >::value>::type = double; Eigen::MatrixBase::StorageBaseType = Eigen::MatrixBase<Eigen::IndexedView<Eigen::Matrix<double, -1, 1>, long long int, Eigen::internal::SingleRange> >]’
/home/verena/avogadro/avogadro/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:246:32: required from here
/usr/local/include/eigen3/Eigen/src/Core/util/Meta.h:334:40: error: request for member ‘size’ in ‘x’, which is of non-class type ‘const long long int’
Index size(const T& x) { return x.size(); }
^
libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make:115: recipe for target ‘libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o’ failed
make[2]: *** [libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o] Error 1
CMakeFiles/Makefile2:2773: recipe for target ‘libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all’ failed
make[1]: *** [libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all] Error 2
Makefile:149: recipe for target ‘all’ failed
make: *** [all] Error 2
I change the version of the Eigen 3.4, for Eigen2.
The same error.
When you try to compile with Eigen 2, do you still see this part of the error /usr/local/include/eigen3
In that case, the compiler is still picking up the Eigen3 include files.