Thanks for the observation – “interesting” is a tricky word.
Actually, I don’t use pymol (chimera – also Python-based – and VMD are
my stock molecular viewers.) Though I notice that pymol 1.6.0. is
available through synaptic: just installed it, and it doesn’t work!
Though the error is quite different (“freeglut (pymol): failed to open
display :0.0”. Interestingalso, since my DISPLAY variable is set to
":0.0", and no other applications seem to have trouble opening it.)
Lot’s of Python-based stuff does work on my machine.
So that’s another problem to divert me from real work (though not so
ldd avogadro shows all the library dependencies to be
satisfied, so at least I know what libs are needed, buta strategy for
finding some symbol that is supposed to be there but isn’t eludes me.
On 9/14/13 5:11 PM, Stephen P. Molnar wrote:
That’s rather interesting, I wish I could furnish some insight, but
that’s not the case.
Let me suggest something, however, try compiling the subversion
version of Pymol 1.6.0. I just compiled that yesterday evening
straight ‘out of the box’, in Xubuntu 12.04, and it’s working!!!
Stephen P. Molnar, Ph.D. Life is a
Foundation for Chemistry Stochastic
*From:*Robert Wohlhueter [mailto:firstname.lastname@example.org]
Sent: Saturday, September 14, 2013 1:28 PM
Subject: [Avogadro-Discuss] avogadro-1.1.0 build error
Running Ubuntu 12.10 on an AMD64 machine, I have not been able to get
the “debichem” binary version (current 1.0.3) to work, and so thought
I would try a home-build of v.1.1.0. Cmake seems to find all the
requisite dependencies alright, but after a lot of “make -j2” work
(most not shown below), I get an opaque symbol lookup error (shown
below), which confounds building the binaries.
Can anyone point me to which lib/lib-version might satisfy the missing
[ 11%] Generating moc_pythontool_p.cxx
[ 11%] Generating libavogadro_de.qm
/usr/bin/lconvert: symbol lookup error: /usr/bin/lconvert: undefined
make: *** [libavogadro/src/libavogadro_de.qm] Error 127
make: *** [libavogadro/src/CMakeFiles/avogadro.dir/all] Error 2
make: *** Waiting for unfinished jobs…
[ 11%] Building CXX object
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