Residue Coloring options

It took some work, but earlier this week, I finished off options to
allow Color plugins to have their own settings. The first example of
this is “Color by Residue.”

Right now, I have two general color schemes from Jmol (amino and
shapely), plus coloring by hydrophobicity.

I’m going to work out a scale for pKa, much like hydrophobicity.

Any other options or properties for coloring residues?

Other new color schemes coming soon:

  • Color atom by partial charge
  • Color atom by distance from atom 0 (i.e., similar to the color by
    index rainbow)

Other suggestions are most welcome!
-Geoff

Hi,

On Sun, Feb 22, 2009 at 7:04 PM, Geoffrey Hutchison
geoff.hutchison@gmail.com wrote:

It took some work, but earlier this week, I finished off options to allow
Color plugins to have their own settings. The first example of this is
"Color by Residue."

Looks great.

Right now, I have two general color schemes from Jmol (amino and shapely),
plus coloring by hydrophobicity.

I’m going to work out a scale for pKa, much like hydrophobicity.

Any other options or properties for coloring residues?

by Secundary Structure and Backbone/Sidechain in two different colors
would be nice…

Ideally, we would also be able to map these colors to surfaces.

Other new color schemes coming soon:

  • Color atom by partial charge
  • Color atom by distance from atom 0 (i.e., similar to the color by index
    rainbow)

Other suggestions are most welcome!

Do we want python Colors?

Tim