Related project

I just updated our Freshmeat.net project information and ran into this:

http://mt.seas.upenn.edu/Archive/Graphics/A/
http://mt.seas.upenn.edu/Archive/Graphics/A/gallery.html

AtomEye is atomistic visualization software fast enough to handle
output of molecular dynamics simulations with millions of atoms. It
includes parallel and perspective projections with full three-
dimensional navigation, customizable bond and coordination number
calculation, colour-encoding of arbitrary user-defined quantities,
local atomic strain invariant, coloured atom tiling and tracing, up to
16 cutting planes, periodic boundary condition translations, JPEG,
PNG, and EPS screenshots, and animation scripting.