Images for a Whole Directory

General Discussion Support
5

As I brought up last summer (Tasks for Automation) the intent is certainly to have a set of scriptable commands.

Basically, you want something like:

from avogadro import sendMessage

for filename in glob.glob(*.xyz):
        path = cwd + "/" + filename
        sendMessage("openFile", path)
        sendMessage("selectElement", 1)
        sendMessage("showSelectedAtoms", False)
        sendMessage("saveGraphic", path[:-4] + ".png")

And yes, your point would be to select for example based on a SMARTS pattern.