Bugs item #1897745, was opened at 2008-02-20 12:31
Message generated for change (Tracker Item Submitted) made by Item Submitter
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: soc (soc88)
Assigned to: Nobody/Anonymous (nobody)
Summary: *** glibc detected *** avogadro: double free or corruption
Initial Comment:
When playing (Adjust Hydrogens & AutoOpt activated):
Making new quick display lists…
Calling quick display lists…
Calling quick display lists…
Making new quick display lists…
Calling quick display lists…
Calling quick display lists…
Making new quick display lists…
Calling quick display lists…
Calling quick display lists…
Making new quick display lists…
Calling quick display lists…
Making new quick display lists…
Calling quick display lists…
*** glibc detected *** avogadro: double free or corruption (out): 0x0000000000c96d50 ***
======= Backtrace: =========
/lib/libc.so.6[0x7fb94f8d201a]
/lib/libc.so.6(cfree+0x8c)[0x7fb94f8d5bac]
/usr/local/lib/libopenbabel.so.2[0x7fb953c4e75e]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel15OBSmartsPattern5MatchERNS_5OBMolEb+0x73)[0x7fb953c4efd3]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel11OBAtomTyper21AssignImplicitValenceERNS_5OBMolE+0x131)[0x7fb953c79631]
/usr/local/lib/libopenbabel.so.2(_ZNK9OpenBabel6OBAtom18GetImplicitValenceEv+0x2c)[0x7fb953bc89dc]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel15OBAromaticTyper19AssignAromaticFlagsERNS_5OBMolE+0x348)[0x7fb953c76628]
/usr/local/lib/libopenbabel.so.2(_ZNK9OpenBabel6OBAtom10IsAromaticEv+0x2c)[0x7fb953bc8ddc]
/usr/local/lib/libopenbabel.so.2[0x7fb953c4dd55]
/usr/local/lib/libopenbabel.so.2[0x7fb953c4d5c2]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel9OBSSMatch5MatchERSt6vectorIS1_IiSaIiEESaIS3_EEi+0x25b)[0x7fb953c4e08b]
/usr/local/lib/libopenbabel.so.2[0x7fb953c4e7b8]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel15OBSmartsPattern5MatchERNS_5OBMolEb+0x73)[0x7fb953c4efd3]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel20OBForceFieldGhemical8SetTypesEv+0x680)[0x7fb953c93eb0]
/usr/local/lib/libopenbabel.so.2(_ZN9OpenBabel12OBForceField5SetupERNS_5OBMolE+0x88)[0x7fb953bfa008]
/usr/local/lib/avogadro/tools/libautoopttool.so(_ZN8Avogadro13AutoOptThread3runEv+0x4a)[0x7fb94bc24c94]
/usr/lib/libQtCore.so.4[0x7fb951181354]
/lib/libpthread.so.0[0x7fb950d013f7]
/lib/libc.so.6(clone+0x6d)[0x7fb94f93595d]
======= Memory map: ========
00400000-00470000 r-xp 00000000 08:04 2093 /usr/local/bin/avogadro
0066f000-00672000 rw-p 0006f000 08:04 2093 /usr/local/bin/avogadro
00672000-00dc8000 rw-p 00672000 00:00 0 [heap]
406c9000-406ca000 —p 406c9000 00:00 0
406ca000-40eca000 rw-p 406ca000 00:00 0
7fb940000000-7fb940021000 rw-p 7fb940000000 00:00 0
7fb940021000-7fb944000000 —p 7fb940021000 00:00 0
7fb947cc4000-7fb947cce000 r-xp 00000000 08:04 40273 /lib/libnss_files-2.7.so
7fb947cce000-7fb947ece000 —p 0000a000 08:04 40273 /lib/libnss_files-2.7.so
7fb947ece000-7fb947ed0000 rw-p 0000a000 08:04 40273 /lib/libnss_files-2.7.so
7fb947ed0000-7fb947eda000 r-xp 00000000 08:04 40275 /lib/libnss_nis-2.7.so
7fb947eda000-7fb9480d9000 —p 0000a000 08:04 40275 /lib/libnss_nis-2.7.so
7fb9480d9000-7fb9480db000 rw-p 00009000 08:04 40275 /lib/libnss_nis-2.7.so
7fb9480db000-7fb9480f1000 r-xp 00000000 08:04 40186 /lib/libnsl-2.7.so
7fb9480f1000-7fb9482f0000 —p 00016000 08:04 40186 /lib/libnsl-2.7.so
7fb9482f0000-7fb9482f2000 rw-p 00015000 08:04 40186 /lib/libnsl-2.7.so
7fb9482f2000-7fb9482f4000 rw-p 7fb9482f2000 00:00 0
7fb9482f4000-7fb9482fc000 r-xp 00000000 08:04 40187 /lib/libnss_compat-2.7.so
7fb9482fc000-7fb9484fb000 —p 00008000 08:04 40187 /lib/libnss_compat-2.7.so
7fb9484fb000-7fb9484fd000 rw-p 00007000 08:04 40187 /lib/libnss_compat-2.7.so
7fb9484fd000-7fb94850d000 r-xp 00000000 08:04 1345 /usr/local/lib/avogadro/engines/libwireengine.so
7fb94850d000-7fb94870d000 —p 00010000 08:04 1345 /usr/local/lib/avogadro/engines/libwireengine.so
7fb94870d000-7fb94870e000 rw-p 00010000 08:04 1345 /usr/local/lib/avogadro/engines/libwireengine.so
7fb94870e000-7fb948734000 r-xp 00000000 08:04 6201 /usr/local/lib/avogadro/engines/libsurfaceengine.so
7fb948734000-7fb948933000 —p 00026000 08:04 6201 /usr/local/lib/avogadro/engines/libsurfaceengine.so
7fb948933000-7fb948935000 rw-p 00025000 08:04 6201 /usr/local/lib/avogadro/engines/libsurfaceengine.so
7fb948935000-7fb94893e000 r-xp 00000000 08:04 1350 /usr/local/lib/avogadro/engines/libstickengine.so
7Aborted (core dumped)
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